cytonormpy.CytoNorm.normalize_data

cytonormpy.CytoNorm.normalize_data#

CytoNorm.normalize_data(adata=None, file_names=None, batches=None, n_jobs=8)#

Applies the normalization procedure to the files and writes the data to disk or to the anndata file.

Use the file_names and batches parameters to normalize data that were not yet available upon setup.

Parameters:

  • adata (Optional[AnnData]) – Optional. If passed, it is assumed that the original anndata object has been modified. If left None, the original anndata will be used.

  • file_names (Optional[Union`[:py:class:`list[str], str]]) – Optional. If left None, all files from the cytonorm object will be used.

  • batches (Optional[Union`[:py:class:`list[Union[str, int]], str, int]]) – Optional. Specifies the batches of file_names.

  • n_jobs (int) – Number of threads used for data analysis.

Return type:

None

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