cytonormpy._normalization.ExpressionQuantiles

class cytonormpy._normalization.ExpressionQuantiles(n_batches, n_channels, n_quantiles, n_clusters, quantile_array=None)

Calculates and holds the expression quantiles.

Methods

add_nan_slice(batch_idx, cluster_idx)	Adds np.nan of shape n_channels x n_quantile.
add_quantiles(quantile_array, batch_idx, ...)	Adds quantile arrays of shape n_channels x n_quantile.
calculate_and_add_quantiles(data, batch_idx, ...)	Calculates and adds the quantile array.
calculate_quantiles(data)	Public method to calculate quantiles.
get_quantiles([channel_idx, quantile_idx, ...])	Returns a quantile array.