cytonormpy._normalization.GoalDistribution

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cytonormpy._normalization.GoalDistribution#

class cytonormpy._normalization.GoalDistribution(expr_quantiles, goal='batch_mean')#

Calculates and stores the goal distribution of the expression values.

Parameters:

  • expr_quantiles (ExpressionQuantiles) – The expression values divided by batch, quantiles and clusters.

  • goal (Union[int, str]) – Function to calculate the goal expression per cluster and channel. Defaults to batch_mean, which calculates the mean over all batches. Can be any of batch_median, batch_mean or a specific batch passed as an int.

Return type:

None

Methods

get_quantiles(channel_idx, quantile_idx, ...)

Returns a quantile array.
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