cytonormpy.LogTransformer#
- class cytonormpy.LogTransformer(channel_indices=None, t=262144, m=4.5)#
Class to apply the LogTransform. For further documentation refer to the flowutils documentation.
- Parameters:
channel_indices (
Optional[Union`[:py:class:`list[int],ndarray]]) – The channels to be transformed. Specifying None will transform all channels. Defaults to None. Note that in cytonormpy, channel indices will be set automatically by the CytoNorm object.t (
int) – Parameter for the top of the linear scale. Defaults to 262144.m (
float) – Parameter for the number of decades the true logarithmic scale approaches at the high end of the scale
- Return type:
None
Attributes
Methods
inverse_transform(data)Applies inverse hyperlog transform to channels specified in .channel_indices.
transform(data)Applies log transform to channels specified in .channel_indices.