cytonormpy._dataset.DataProviderFCS

class cytonormpy._dataset.DataProviderFCS(input_directory, metadata, truncate_max_range=False, channels=None, transformer=None)

Class to handle the data providing for FCS files. This class will prepare a dataframe where the data are annotated with the metadata and the relevant channel data will be transformed.

Attributes

channels
transformer

Methods

annotate_metadata(data, file_name)
annotate_metadata_old(data, file_name)	Annotates metadata (sample identifier, batch value and reference value) to the expression data.
inverse_transform_data(data)	Inverse transforms the data according to the transformer added upon instantiation.
parse_raw_data(file_name)
prep_dataframe(file_name)	Prepares the dataframe by annotating metadata, selecting the relevant channels and transforming.
select_channels(data)	Subsets the channels in a dataframe.
subsample_df(df, n)
transform_data(data)	Transforms the data according to the transformer added upon instantiation.