cytonormpy._dataset.Metadata

class cytonormpy._dataset.Metadata(metadata, reference_column, reference_value, batch_column, sample_identifier_column)

Methods

add_file_to_metadata(file_name, batch)
assemble_reference_assembly_dict()	Builds a dictionary of shape {batch: [files, ...], ...} to store files of batches without references
convert_batch_dtype()	If the batch is entered as a string, we convert them to integers in order to comply with the numpy sorts later on.
find_batches_without_reference()	Return a list of batch identifiers for which the given ref_control_value never appears in the reference column.
get_batch(file_name)	Returns the corresponding batch of a file.
get_corresponding_reference_file(file_name)	Returns the corresponding reference file of a file.
get_files_per_batch(batch)
get_ref_value(file_name)	Returns the corresponding reference value of a file.
get_reference_file_names()
get_validation_file_names()
to_df()
update()
validate_batch_references()
validate_metadata()
validate_metadata_table()